Publications

2022

Microgravity environment grown crystal structure information based engineering of direct electron transfer type glucose dehydrogenase

Junko Okuda-Shimazaki, Hiromi Yoshida, Inyoung Lee, Katsuhiro Kojima, Nanoha Suzuki, Wakako Tsugawa, Mitsugu Yamada, Koji Inaka, Hiroaki Tanaka, Koji SODE

Communications Biology

in Press

Structure of lactate oxidase from Enterococcus hirae revealed new aspects of active site loop function: product inhibition mechanism and oxygen gatekeeper

Kentaro Hiraka, Hiromi Yoshida, Wakako Tsugawa, Ryutaro Asano, Jeffrey T. La Belle, Kazunori Ikebukuro, Koji Sode

Protein Science

31:10, e4434

The development of micro–sized enzyme sensor based on direct electron transfer type open circuit potential sensing principle

David Probst, Inyoung Lee, Koji SODE

Electrochimica Acta

426:10, 140798

A Thiol-Reactive Phenazine Ethosulfate (trPES) – A Novel Redox Mediator for Quasi-Direct Electron Transfer Type Sensors

Maya Fitriana, Kentaro Hiraka, Kazunori Ikebukuro, Koji SODE, Wakako Tsugawa

Sensors and Materials Sensors and Materials

34:6, 2105-2124

In vitro continuous 3 months operation of direct electron transfer type open circuit potential based glucose sensor: heralding the next CGM sensor

nyoung Lee, Wakako Tsugawa, Kazunori Ikebukuro, Koji SODE

Journal of Diabetes Science and Technology

16(5):1107-1113

Development of an electrochemical impedance spectroscopy based biosensor for detection of ubiquitin C-Terminal hydrolase L1

Jinhee Lee, Bryant Kane, Mukunc Khanwalker, Koji SODE

Biosensors and Bioelectronics

208:114232

A Glycemia Risk Index (GRI) of Hypo- and Hyperglycemia for Continuous Glucose Monitoring Validated by Clinician Ratings

David Klonoff et al. (multiple authors including Koji SODE)

Journal of Diabetes Science and Technology

doi: 10.1177/19322968221085273

An Amine-Reactive Phenazine Ethosulfate (arPES) - A Novel Redox Probe for Electrochemical Aptamer based Sensor

Jinhee Lee, Madoka Nagata, Stephen Henley, Kazunori Ikebukuro, Koji SODE

Sensors (MDPI)

24;22(5):1760

Development of a DNA aptamer that binds to the complementarity-determining region of therapeutic monoclonal antibody and affinity improvement induced by pH-change for sensitive detection

Taro Saito, Yutaka Shimizu, Kaori Tsukakoshi, Koichi Abe, Jinhee Lee, Kinuko Ueno, Ryutaro Asano, Brian V. Jones, Tomohiro Yamada, Tatsuki Nakano, Jiaxing Tong, Asami Hishiki, Kodai Hara, Hiroshi Hashimoto, Koji SODE

Biosensors and Bioelectronics

203:114027

Light‑induced production of isobutanol and 3‑methyl‑1‑butanol by metabolically engineered cyanobacteria

Shunichi Kobayashi, Shota Atsumi, Kazunori Ikebukuro, Koji SODE, Ryutaro Asano

Microbial Cell Factories

21:7

Transient potentiometry based D-serine sensor using engineered D-amino acid oxidase showing quasi-direct electron transfer property

Shouhei Takamatsu, Inyoung Lee, Jinhee Lee, Ryutaro Asano, Wakako Tsugawa, Kazunori Ikebukuro, Jeffrey E. Dick, Koji SODE

Biosensors and Bioelectronics

200 :113927

Development of a POCT type insulin sensor employing anti-insulin single chain variable fragment based on faradaic electrochemical impedance spectroscopy under single frequency measurement

Mukund Khanwalker, Rinko Fujita, Jinhee Lee, Ellie Wilson, Kohei Ito, Ryutaro Asano, Kazunori Ikebukuro, Jeffrey LaBelle, Koji SODE

Biosensors and Bioelectronics

200:113901

In vitro evaluation of miniaturized amperometric enzyme sensor based on the direct electron transfer principle for continuous glucose monitoring

Yutaro Inoue, Yasuhide Kusaka, Kotaro Shinozaki, Inyoung Lee, Koji SODE

Journal of Diabetes Science and Technology

doi.org/10.1177/19322968211070614

2021

Clinical Study of a High Accuracy Green Design Blood Glucose Monitor Using an Innovative Optical Transmission Absorbance System

Takeyuki Moriuchi, Yuto Otaki, Hiroya Satou, Fumihiko Chai,Yuma Hayashida, Ryokei Aikawa, Takayuki Sugiyama, Koji SODE

Journal of Diabetes Science and Technology

doi.org/10.1177/19322968211060865

Current and future prospective of biosensing molecules for point-of-care sensors for diabetes biomarker

Mika Hatada, Ellie Wilson, Mukund Khanwalker, David Probst, Junko Okuda-Shimazaki, Koji Sode

Sensors & Actuators: B. Chemical

351, 130914

Continuous electrochemical monitoring of L-glutamine using redox-probe-modified L-glutamine-binding protein based on intermittent pulse amperometry.

Shouhei Takamatsu, Jinhee Lee, Ryutaro Asano, Wakako Tsugawa, Kazunori Ikebukuro,

Sensors and Actuators B:Chemical

346, 130554

Artificial complementary chromatic acclimation gene expression system in Escherichia coli

Dwi Ariyanti, Kazunori Ikebukuro, Koji SODE

Microb Cell Fact.

20:128

Rapid, convenient, and highly sensitive detection of human hemoglobin in serum using a high-affinity bivalent antibody–enzyme complex

Daimei Miura, Hayato Kimura, Wakako Tsugawa, Kazunori Ikebukuro, , Ryutaro Asano,

TALANTA

234, 122638,

Electrochemical Quantification of Accelerated FADGDH Rates in Aqueous Nanodroplets.

Kathryn J. Vannoy, Inyoung Lee , Jeffrey E. Dick,

Proceedings of the National Academy of Sciences

118(25) e2025726118,

G-quadruplex-forming aptamer enhances the peroxidase activity of myoglobin against luminol.

Kaori Tsukakoshi, Yasuko Yamagishi, Mana Kanazashi, Kenta Nakama, Daiki Oshikawa, Nasa Savory, Akimasa Matsugami, Fumiaki Hayashi, Jinhee Lee, Taiki Saito, Koji SODE, Kanjana Khunathai, Hitoshi Kuno, Kazunori Ikebukuro,

Nucleic Acids Res.

49(11), 6069-6081

Data on G-quadruplex topology, and binding ability of G-quadruplex forming sequences found in the promoter region of biomarker proteins and those relations to the presence of nuclear localization signal in the proteins.

Jinhee Lee , Kentaro Teramoto, Tomomi Yokoyama, Kinuko Ueno, Kaori Tsukakoshi, Koji SODE, Kazunori Ikebukuro,

Data in Bried, 36 (2021) 107828

A self-powered glucose sensor based on BioCapacitor principle with micro-sized enzyme anode employing direct electron transfer type FADGDH.

Inyoung Lee, Junko Okuda-Shimazaki, Wakako Tsugawa, Kazunori Ikebukuro and Koji SODE,

Journal of Physics: Energy, 3, (2021)

034009

A self-powered glucose sensor based on BioCapacitor principle with micro-sized enzyme anode employing direct electron transfer type FADGDH.

Inyoung Lee, Junko Okuda-Shimazaki, Wakako Tsugawa, Kazunori Ikebukuro and Koji SODE

Journal of Physics: Energy

3:034009

Continuous glucose monitoring systems - Current status and future perspectives of the flagship technologies in biosensor research -

Inyoung Lee, David Probst, David Klonoff and Koji Sode

Biosensors and Bioelectronics

181:113054

Development of an Interdigitated Electrode-Based Disposable Enzyme Sensor Strip for Glycated Albumin Measurement.

Mika Hatada, Noya Loew, Junko Okuda-Shimazaki, Mukund Khanwalker, Wakako Tsugawa, Ashok Mulchandani, Koji SODE,

Molecules

26(3), 734

Development of glycated peptide enzyme sensor based flow injection analysis system for haemoglobin A1c monitoring using quasi-direct electron transfer type engineered fructosyl peptide oxidase.

Mika Hatada, Satomi Saito, Satoshi Yonehara, Wakako Tsugawa, Ryutaro Asano, Kazunori Ikebukuro,

Biosensors and Bioelectronics

177:112984

Online ahead of print.

Strategic design and improvement of the internal electron transfer of heme b domain-fused glucose dehydrogenase for use in direct electron transfer-type glucose sensors.

Kohei Ito, Junko Okuda-Shimazaki, Katsuhiro Kojima, Kazushige Mori, Wakako Tsugawa, Ryutaro Asano, Kazunori Ikebukuro,

Biosensors and Bioelectronics,

176:112911

Rational design of direct electron transfer type l-lactate dehydrogenase for the development of multiplexed biosensor.

Kentaro Hiraka, Wakako Tsugawa, Ryutaro Asano, Murat A Yokus, Kazunori Ikebukuro, Michael A Daniele

Biosensors and Bioelectronics

176:112933

Rapid and homogeneous electrochemical detection by fabricating a high affinity bispecific antibody-enzyme complex using two Catcher/Tag systems.

Hayato Kimura, Daimei Miura, Wakako Tsugawa, Kazunori Ikebukuro, , Ryutaro Asano

Biosensors and Bioelectronics

175:112885

2020

A Green Light-Regulated T7 RNA Polymerase Gene Expression System for Cyanobacteria.

Chika Shono, Dwi Ariyanti, Koichi Abe, Yuta Sakai, Ippei Sakamoto, Kaori Tsukakoshi, Koji SODE, Kazunori Ikebukuro

Marine Biotechnology

(2020), on line ahead of print

DOI:10.1007/s10126-020-09997-w

Creation of a novel DET type FAD glucose dehydrogenase harboring Escherichia coli derived cytochrome b562 as an electron transfer domain

TakumiYanase, JunkoOkuda-Shimazaki, Kazushige Mori, KatsuhiroKojima, WakakoTsugawa, Koji SODE,

Biochemical Biophysical Research Communications

(530(1):82-86

DOI:10.1016/j.bbrc.2020.06.132

Employment of 1-Methoxy-5-Ethyl Phenazinium Ethyl Sulfate as a Stable Electron Mediator in Flavin Oxidoreductases-Based Sensors

Maya Fitriana, Noya Loew, Arief Budi Witarto, Kazunori Ikebukuro, Koji SODE, Wakako Tsugawa

Sensors (Basel)

20(10):2825

DOI:10.3390/s20102825

Alteration of Electron Acceptor Preferences in the Oxidative Half-Reaction of Flavin-Dependent Oxidases and Dehydrogenases

Kentaro Hiraka, Wakako Tsugawa, Koji SODE

International Journal of Molecular Sciences

21(11):3797

DOI:10.3390/ijms21113797

Engineered Glucose Oxidase Capable of Quasi-Direct Electron Transfer after a Quick-and-Easy Modification with a Mediator

Nanami Suzuki, Jinhee Lee, Noya Loew, Yuka Takahashi-Inose, Junko Okuda-Shimazaki, Katsuhiro Kojima, Kazushige Mori, Wakako Tsugawa, Koji SODE

International Journal of Molecular Sciences

21(3):1137

DOI:10.3390/ijms21031137

2019

Rational engineering of Aerococcus viridans L-lactate oxidase for the mediator modification to achieve quasi-direct electron transfer type lactate sensor

Kentaro Hiraka, Katsuhiro Kojima, Wakako Tsugawa, Ryutaro Asano, Kazunori Ikebukuro, Koji SODE

Biosensors and Bioelectronics

151:111974

DOI:10.1016/j.bios.2019.111974

FAD dependent glucose dehydrogenases -Discovery and engineering of representative glucose sensing enzymes-

Junko Okuda-Shimazaki, Hiromi Yoshida, Koji SODE

Bioelectrochemistry

132:107414

DOI:10.1016/j.bioelechem.2019.107414

Improves the Immunostimulatory Effects of Cytosine-Phosphate-Guanine Oligonucleotides

Kazuaki Hoshi, Tomohiko Yamazaki, Yuuki Sugiyama, Kaori Tsukakoshi, Wakako Tsugawa, Koji SODE and Kazunori Ikebukuro

Nucleic Acid Therapeutics

(2019),

DOI:

Application of an engineered chromatic acclimation sensor for red-light regulated gene expression in cyanobacteria.

Shunichi Kobayashi, Mitsuharu Nakajima, Ryutaro Asano, Eunice A. Ferreira, Koichi Abe, Paula Tamagnini, Shota Atsumi, Koji SODE

Algal Research

44:101691

DOI:10.1016/j.algal.2019.101691

X-ray structure of the direct electron transfer-type FAD glucose dehydrogenase catalytic subunit complexed with a hitchhiker protein

Hiromi Yoshida, Katsuhiro Kojima, Masaki Shiota, Keichi Yoshimatsu, Tomohiko Yamazaki, Stefano Ferri, Wakako Tsugawa, Shigehiro Kamitori, Koji SODE

Acta Crsytallographica D Structural Biological Crystallography

D75:841-851

DOI:10.1107/S2059798319010878

G-Quadruplex Structure Improves the Immunostimulatory Effects of Cytosine-Phosphate-Guanine Oligonucleotides

Kazuaki Hoshi, Tomohiko Yamazaki, Yuuki Sugiyama, Kaori Tsukakoshi,Wakako Tsugawa, Koji SODE, Kazunori Ikebukuro

Nucleic Acid Therapeutics

29(4):224-220

DOI:10.1089/nat.2018.0761

Third generation impedimetric sensor employing direct electron transfer type glucose dehydrogenase

Yuka Ito, Junko Okuda-Shimazaki, Wakako Tsugawa, Noya Loew, Isao Shitanda, Chi E. Lin, Jeffrey La Belle, Koji SODE

Biosensors and Bioelectronics

129(15):189-197

DOI:10.1016/j.bios.2019.01.018

Development of a third-generation glucose sensor based on the open circuit potential for continuous glucose monitoring

Inyoung Lee, Noya Loew, Wakako Tsugawa, Kazunori Ikebukuro, Koji SODE

Biosensors and Bioelectronics

124-125(15):216-223

DOI:10.1016/j.bios.2018.09.099

Affinity sensor for haemoglobin A1c based on single-walled carbon nanotube field effect transistor and fructosyl amino acid binding protein

Mika Hatadaa, Thien-Toan Tranb, Wakako Tsugawaa, Koji SODE*, Ashok Mulchandanid

Biosensors and Bioelectronics

(2019)

DOI:10.1016/j.bios.2018.09.069

Designer fungus FAD glucose dehydrogenase capable of direct electron transfer

Kohei Ito, Junko Okuda-Shimazaki, Kazushige Mori, Katsuhiro Kojima, Wakako Tsugawa, Kazunori Ikebukuro, Chi-En Lin, Jeffrey La Belle, Hiromi Yoshida, Koji SODE

Biosensors and Bioelectronics

(2019)

DOI:10.1016/j.bios.2018.07.027.

2020

2019

2021

2022